Package: omicsTools
Title: Omics Data Processing Toolbox
Version: 2.0.0
Authors@R: c(
    person("Yaoxiang", "Li", role = "aut"),
    person("Meth", "Jayatilake", role = "aut"),
    person("Anushka", "Dongaonkar", role = "aut"),
    person("Rupayan", "Mallick", role = "aut"),
    person("Amrita", "Cheema", email = "metabolomics@georgetown.edu",
           role = c("cre", "aut"))
  )
Description: Provides tools for processing and analyzing omics data
        from genomics, transcriptomics, proteomics, and metabolomics
        platforms. Includes data import, filtering, imputation,
        normalization, targeted calibration, spectrum export,
        visualization, statistical comparisons, and reproducible QC
        reports. The QC-RLSC (quality control-based robust LOESS signal
        correction) algorithm is used for normalization. Dunn et al.
        (2011) <doi:10.1038/nprot.2011.335>.
License: AGPL (>= 3)
URL: https://github.com/cheemalab/omicsTools
BugReports: https://github.com/cheemalab/omicsTools/issues
Depends: R (>= 4.1.0)
Imports: bs4Dash, cli, dplyr, DT, ggplot2, htmltools, jsonlite, readr,
        rlang, stats, shiny (>= 1.7.2), tibble, tidyr, utils, tools
Encoding: UTF-8
Suggests: testthat (>= 3.2.0), knitr, rmarkdown, cmmr, readxl,
        openxlsx, zip
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://cheemalab.r-universe.dev
Date/Publication: 2026-11-04 05:38:16 UTC
RemoteUrl: https://github.com/cheemalab/omicstools
RemoteRef: HEAD
RemoteSha: 692a278f8b8e642569867f5859a168d347f34f6d
NeedsCompilation: no
Packaged: 2026-11-04 06:47:32 UTC; root
Author: Yaoxiang Li [aut],
  Meth Jayatilake [aut],
  Anushka Dongaonkar [aut],
  Rupayan Mallick [aut],
  Amrita Cheema [cre, aut]
Maintainer: Amrita Cheema <metabolomics@georgetown.edu>